Paper · 15979196

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Royce TE and 8 others. Trends Genet, 2005. Cited by 71 papers, by iCite.

11 sourcespapers-2026-11-12-0.1.0

Cite this record

ConductScience Library. Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping. Papers, record 15979196. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/15979196

On this page

Paper

PubMed's record of the paper, with iCite's citation figures. No abstract is shown.

Title: Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.; PubMed
Journal: Trends Genet; PubMed
Year: 2005; PubMed
Publication types: Comparative Study, Journal Article, Research Support, N.I.H., Extramural, Research Support, U.S. Gov't, P.H.S., Review; PubMed
PubMed: https://pubmed.ncbi.nlm.nih.gov/15979196/; PubMed
DOI: https://doi.org/10.1016/j.tig.2005.06.007; PubMed
PMC: https://pmc.ncbi.nlm.nih.gov/articles/PMC1855044/; PubMed
The journal: https://conductscience.org/library/journal-index/8507085; PubMed
Citations, by iCite: 71; iCite
Relative citation ratio, by iCite: 1.16; iCite
Revised in PubMed: 2026-05-18; PubMed

Authors9

The authors in the order PubMed's record lists them, with the ORCID iDs it states.

Order	Author	Forename	Kind
1	Royce TE	Thomas E
2	Rozowsky JS	Joel S
3	Bertone P	Paul
4	Samanta M	Manoj
5	Stolc V	Viktor
6	Weissman S	Sherman
7	Snyder M	Michael
8	Gerstein M	Mark
9	New Collective Author		Group

Source PubMed

Topics8

NLM's MeSH indexing of the paper, its major topics first.

MeSH term	Major
Oligonucleotide Array Sequence Analysis	Major topic
Algorithms
Base Sequence
Computational Biology
DNA
Humans
Molecular Probes
Transcription, Genetic

Source PubMed

Grants2

Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.

Grant, as the record writes it	Agency	Country	NIH project	Stated by
P50 HG002357	NHGRI NIH HHS	United States	P50HG002357	PubMed and NIH
P50 HG 02357	NHGRI NIH HHS	United States	P50HG002357	PubMed and NIH

Source NIH RePORTER

Trials0

The trials whose ClinicalTrials.gov record lists the paper, and the trial numbers the paper's PubMed record names.

None in this release.

Comments and corrections0

PubMed's comments and corrections, NLM's own indexing: retractions first, then expressions of concern, errata and updates, and comments last.

None in this release.

References34

The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.

Order	PMID	Title	Journal	Year	In Papers	Source
1	11,237,012	Experimental annotation of the human genome using microarray technology.	Nature	2001	https://conductscience.org/library/papers/11237012	PubMed
2	11,691,856	High-throughput variation detection and genotyping using microarrays.	Genome Res	2001	https://conductscience.org/library/papers/11691856	PubMed
3	11,988,577	Large-scale transcriptional activity in chromosomes 21 and 22.	Science	2002	https://conductscience.org/library/papers/11988577	PubMed
4	12,016,055	Making sense of microarray data distributions.	Bioinformatics	2002	https://conductscience.org/library/papers/12016055	PubMed
5	12,073,330	ChIP-chip: a genomic approach for identifying transcription factor binding sites.	Methods Enzymol	2002	https://conductscience.org/library/papers/12073330	PubMed
6	12,202,758	Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays.	Nucleic Acids Res	2002	https://conductscience.org/library/papers/12202758	PubMed
7	12,421,762	Gene expression analysis using oligonucleotide arrays produced by maskless photolithography.	Genome Res	2002	https://conductscience.org/library/papers/12421762	PubMed
8	12,454,644	Microarray data normalization and transformation.	Nat Genet	2002	https://conductscience.org/library/papers/12454644	PubMed
9	12,584,122	Identifying differentially expressed genes using false discovery rate controlling procedures.	Bioinformatics	2003	https://conductscience.org/library/papers/12584122	PubMed
10	12,600,945	The transcriptional activity of human Chromosome 22.	Genes Dev	2003	https://conductscience.org/library/papers/12600945	PubMed

1 to 10 of 34

See all 34 references

Cited by44

The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 71 citations.

PMID	Title	Journal	Year	In Papers	Source
29,934,598	Analysis of sensitive information leakage in functional genomics signal profiles through genomic deletions.	Nat Commun	2018	https://conductscience.org/library/papers/29934598	PubMed
28,112,249	Decreased expression of pseudogene PTENP1 promotes malignant behaviours and is associated with the poor survival of patients with HNSCC.	Sci Rep	2017	https://conductscience.org/library/papers/28112249	PubMed
27,857,566	Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide.	Biophysics (Nagoya-shi)	2007	https://conductscience.org/library/papers/27857566	PubMed
27,539,025	A new avenue for obtaining insight into the functional characteristics of long noncoding RNAs associated with estrogen receptor signaling.	Sci Rep	2016	https://conductscience.org/library/papers/27539025	PubMed
24,937,006	A method for detecting long non-coding RNAs with tiled RNA expression microarrays.	PLoS One	2014	https://conductscience.org/library/papers/24937006	PubMed
23,887,659	Detecting and comparing non-coding RNAs in the high-throughput era.	Int J Mol Sci	2013	https://conductscience.org/library/papers/23887659	PubMed
23,776,682	Genome-wide survey of cold stress regulated alternative splicing in Arabidopsis thaliana with tiling microarray.	PLoS One	2013	https://conductscience.org/library/papers/23776682	PubMed
23,216,884	Flexible and efficient genome tiling design with penalized uniqueness score.	BMC Bioinformatics	2012	https://conductscience.org/library/papers/23216884	PubMed
23,100,713	Functional genomics as a tool in virus research.	Indian J Microbiol	2008	https://conductscience.org/library/papers/23100713	PubMed
22,499,683	Fast wavelet based functional models for transcriptome analysis with tiling arrays.	Stat Appl Genet Mol Biol	2012	https://conductscience.org/library/papers/22499683	PubMed

1 to 10 of 44

See all 44 cited by

Genes0

The genes the Gene search release ties to the paper: Swiss-Prot's references first, then PubTator's text mining.

None in this release.

Drugs0

The drugs whose trials, in the Pipelines release, list the paper.

None in this release.

Data0

The data bank entries PubMed's record names. Trial numbers are under Trials.

None in this release.

Data dates

The date of each source this release read.

PubMed: 2026-11-06; PubMed
iCite: 2026-11-05; iCite
PMC's ID file: 2026-11-05; PMC's ID file
NIH RePORTER's grant and paper links: 2026-11-01; NIH RePORTER's grant and paper links
Trials: 2026-11-12
Gene search: 2026-11-11
Pipelines: 2026-09-18

Sources 11

ChEMBL, through Open TargetsCC BY-SA 3.0
ClinicalTrials.govNo license stated
HGNCCC0
iCiteCC BY 4.0
NCBI GenePublic domain (US government)
NIH RePORTER's grant and paper linksPublic domain
Open TargetsCC0 1.0
PMC's ID filePublic domain (US government)
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0

Each source's terms

ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
ClinicalTrials.govnone stated
HGNCCC0: https://www.genenames.org/about/license/
iCiteCC BY 4.0
NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license

ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.

For software

Read this paper from software.

The record and each of its lists are JSON, twenty rows a page. No key.

GET https://conductscience.org/api/papers/v1/15979196

GET https://conductscience.org/api/papers/v1/15979196/references?page=2

API reference For AI assistants