Paper · 19082553

Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions.

Casjens SR and 1 other. Methods Mol Biol, 2009. Cited by 249 papers, by iCite.

11 sourcespapers-2026-11-12-0.1.0

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ConductScience Library. Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions. Papers, record 19082553. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/19082553

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Paper

PubMed's record of the paper, with iCite's citation figures. No abstract is shown.

Title: Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions.; PubMed
Journal: Methods Mol Biol; PubMed
Year: 2009; PubMed
Publication types: Journal Article, Research Support, U.S. Gov't, Non-P.H.S.; PubMed
PubMed: https://pubmed.ncbi.nlm.nih.gov/19082553/; PubMed
DOI: https://doi.org/10.1007/978-1-60327-565-1_7; PubMed
PMC: https://pmc.ncbi.nlm.nih.gov/articles/PMC3082370/; PubMed
The journal: https://conductscience.org/library/journal-index/9214969; PubMed
Citations, by iCite: 249; iCite
Relative citation ratio, by iCite: 7.18; iCite
Revised in PubMed: 2025-05-29; PubMed

Authors2

The authors in the order PubMed's record lists them, with the ORCID iDs it states.

Order	Author	Forename	Kind	ORCID iD
1	Casjens SR	Sherwood R
2	Gilcrease EB	Eddie B

Source PubMed

Topics4

NLM's MeSH indexing of the paper, its major topics first.

MeSH term	Major
DNA Packaging	Major topic
Genome, Viral	Major topic
Virion	Major topic
Sequence Analysis, DNA

Source PubMed

Grants1

Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.

Grant, as the record writes it	Agency	Country	NIH project	Stated by
R01 AI074825	NIAID NIH HHS	United States	R01AI074825	PubMed and NIH

Source NIH RePORTER

Trials0

The trials whose ClinicalTrials.gov record lists the paper, and the trial numbers the paper's PubMed record names.

None in this release.

Comments and corrections0

PubMed's comments and corrections, NLM's own indexing: retractions first, then expressions of concern, errata and updates, and comments last.

None in this release.

References60

The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.

Order	PMID	Title	Journal	Year	In Papers	Source
1	8,459,766	DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics.	Mol Microbiol	1993	https://conductscience.org/library/papers/8459766	PubMed
2	6,783,769	Maturation of bacteriophage SPPI DNA: limited precision in the sizing of mature bacteriophage genomes.	J Virol	1981	https://conductscience.org/library/papers/6783769	PubMed
3	2,370,847	A molecular analysis of terminase cuts in headful packaging of Salmonella phage P22.	Mol Gen Genet	1990	https://conductscience.org/library/papers/2370847	PubMed
4	6,335,448	Nucleotide sequence and properties of the cohesive DNA termini from bacteriophage HP1c1 of Haemophilus influenzae Rd.	Gene	1984	https://conductscience.org/library/papers/6335448	PubMed
5	3,928,902	Mapping the genes in the terminal redundancy of bacteriophage SPO1 with restriction endonucleases.	J Virol	1985	https://conductscience.org/library/papers/3928902	PubMed
6	2,266,564	Bacteriophage T7 DNA packaging. III. A "hairpin" end formed on T7 concatemers may be an intermediate in the processing reaction.	J Mol Biol	1990	https://conductscience.org/library/papers/2266564	PubMed
7	4,931,680	Nucleotide sequence analysis of DNA. II. Complete nucleotide sequence of the cohesive ends of bacteriophage lambda DNA.	J Mol Biol	1971	https://conductscience.org/library/papers/4931680	PubMed
8	10,074,068	Sequence of Shiga toxin 2 phage 933W from Escherichia coli O157:H7: Shiga toxin as a phage late-gene product.	J Bacteriol	1999	https://conductscience.org/library/papers/10074068	PubMed
9	10,652,093	Complete nucleotide sequence, molecular analysis and genome structure of bacteriophage A118 of Listeria monocytogenes: implications for phage evolution.	Mol Microbiol	2000	https://conductscience.org/library/papers/10652093	PubMed
10	15,659,686	The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy.	J Bacteriol	2005	https://conductscience.org/library/papers/15659686	PubMed

1 to 10 of 60

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Cited by202

The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 249 citations.

PMID	Title	Journal	Year	In Papers	Source
42,983,633	PhPV1.2, a novel Autographivirales bacteriophage infecting biofilm forming Vibrio parahaemolyticus: genomic insights and characterization.	BMC Microbiol	2026	https://conductscience.org/library/papers/42983633	PubMed
42,875,451	Small viruses reveal bidirectional evolution between HK97-fold viruses and encapsulins via procapsids.	Nat Commun	2026	https://conductscience.org/library/papers/42875451	PubMed
42,864,356	Eradication of catheter-associated MDR Acinetobacter baumannii biofilms mediated by novel phage encoded depolymerase activity.	NPJ Biofilms Microbiomes	2026	https://conductscience.org/library/papers/42864356	PubMed
42,776,782	Bacteriophages 6phi8, 6phi10, and 6phi13 Isolated from the Therapeutic Cocktail "Sextaphag®".	BioTech (Basel)	2026	https://conductscience.org/library/papers/42776782	PubMed
42,635,430	Dissecting the dsDNA viral packaging machinery: structural evolution and potential for therapeutics.	J Virol	2026	https://conductscience.org/library/papers/42635430	PubMed
42,405,778	Something old, something new? Herpesvirus genome packaging examined in light of lessons from the tailed bacteriophages.	J Virol	2026	https://conductscience.org/library/papers/42405778	PubMed
42,380,887	Cell-free synthesis and characterization of Salmonella, Escherichia coli, and Shigella-specific bacteriophages.	Microb Cell Fact	2026	https://conductscience.org/library/papers/42380887	PubMed
42,324,716	Human Gut Phageome Analysis Uncovers Thousands of Highly Modular Endolysins.	Microbiologyopen	2026	https://conductscience.org/library/papers/42324716	PubMed
42,277,063	Lethal permeabilization of host bacteria to small-molecule compounds during phage penetration.	Nat Commun	2026	https://conductscience.org/library/papers/42277063	PubMed
42,226,204	Isolation and characterization of a novel lytic phage Artin targeting typhoidal and nontyphoidal Salmonella and evaluation of its antibacterial efficacy in food.	Virol J	2026	https://conductscience.org/library/papers/42226204	PubMed

1 to 10 of 202

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Genes2

The genes the Gene search release ties to the paper: Swiss-Prot's references first, then PubTator's text mining.

Gene	NCBI Gene ID	Linked by	In Genes	Source
CBX5	23,468	PubTator's text mining	https://conductscience.org/library/genes/23468	NCBI Gene
CHP1	11,261	PubTator's text mining	https://conductscience.org/library/genes/11261	NCBI Gene

Drugs0

The drugs whose trials, in the Pipelines release, list the paper.

None in this release.

Data0

The data bank entries PubMed's record names. Trial numbers are under Trials.

None in this release.

Data dates

The date of each source this release read.

PubMed: 2026-11-06; PubMed
iCite: 2026-11-05; iCite
PMC's ID file: 2026-11-05; PMC's ID file
NIH RePORTER's grant and paper links: 2026-11-01; NIH RePORTER's grant and paper links
Trials: 2026-11-12
Gene search: 2026-11-11
Pipelines: 2026-09-18

Sources 11

ChEMBL, through Open TargetsCC BY-SA 3.0
ClinicalTrials.govNo license stated
HGNCCC0
iCiteCC BY 4.0
NCBI GenePublic domain (US government)
NIH RePORTER's grant and paper linksPublic domain
Open TargetsCC0 1.0
PMC's ID filePublic domain (US government)
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0

Each source's terms

ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
ClinicalTrials.govnone stated
HGNCCC0: https://www.genenames.org/about/license/
iCiteCC BY 4.0
NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license

ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.

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