Paper20164092
Minimizing off-target signals in RNA fluorescent in situ hybridization.
Arvey A and 5 others. Nucleic Acids Res, 2010. Cited by 23 papers, by iCite.
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ConductScience Library. Minimizing off-target signals in RNA fluorescent in situ hybridization. Papers, record 20164092. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/20164092
Paper
PubMed's record of the paper, with iCite's citation figures. No abstract is shown.
Topics10
NLM's MeSH indexing of the paper, its major topics first.
| MeSH term | Major |
|---|---|
| In Situ Hybridization, Fluorescence | Major topic |
| RNA Probes | Major topic |
| RNA, Messenger | Major topic |
| Animals | |
| Drosophila Proteins | |
| Drosophila melanogaster | |
| Embryo, Nonmammalian | |
| Nuclear Proteins | |
| Repetitive Sequences, Nucleic Acid | |
| Transcription Factors |
Source PubMed
Grants4
Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.
| Grant, as the record writes it | Agency | Country | NIH project | Stated by | Source |
|---|---|---|---|---|---|
| R01 GM077197 | NIGMS NIH HHS | United States | R01GM077197 | PubMed and NIH | NIH RePORTER |
| R37 HD028315 | NICHD NIH HHS | United States | R37HD028315 | PubMed and NIH | NIH RePORTER |
| R37HD28315 | NICHD NIH HHS | United States | R37HD028315 | PubMed and NIH | NIH RePORTER |
| T32GM07240 | NIGMS NIH HHS | United States | T32GM007240 | PubMed and NIH | NIH RePORTER |
References22
The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.
| Order | PMID | Title | Journal | Year | In Papers | Source |
|---|---|---|---|---|---|---|
| 1 | 216,014 | Detection of viral sequences of low reiteration frequency by in situ hybridization. | Proc Natl Acad Sci U S A | 1978 | https://conductscience.org/library/papers/216014 | PubMed |
| 2 | 11,071,945 | Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. | Nucleic Acids Res | 2000 | https://conductscience.org/library/papers/11071945 | PubMed |
| 3 | 12,624,916 | Visualization of single molecules of mRNA in situ. | Methods Enzymol | 2003 | https://conductscience.org/library/papers/12624916 | PubMed |
| 4 | 18,806,792 | Imaging individual mRNA molecules using multiple singly labeled probes. | Nat Methods | 2008 | https://conductscience.org/library/papers/18806792 | PubMed |
| 5 | 16,740,623 | PROBER: oligonucleotide FISH probe design software. | Bioinformatics | 2006 | https://conductscience.org/library/papers/16740623 | PubMed |
| 6 | 6,169,002 | Detection of poly A+ RNA in sea urchin eggs and embryos by quantitative in situ hybridization. | Nucleic Acids Res | 1981 | https://conductscience.org/library/papers/6169002 | PubMed |
| 7 | 12,808,017 | Fluorescence in situ hybridization: past, present and future. | J Cell Sci | 2003 | https://conductscience.org/library/papers/12808017 | PubMed |
| 8 | 16,083,717 | Expression pattern of Wnt signaling components in the adult intestine. | Gastroenterology | 2005 | https://conductscience.org/library/papers/16083717 | PubMed |
| 9 | 16,000,786 | Empirical establishment of oligonucleotide probe design criteria. | Appl Environ Microbiol | 2005 | https://conductscience.org/library/papers/16000786 | PubMed |
| 10 | 15,297,669 | Multiplex detection of RNA expression in Drosophila embryos. | Science | 2004 | https://conductscience.org/library/papers/15297669 | PubMed |
| 11 | 6,692,991 | Detection of mrnas in sea urchin embryos by in situ hybridization using asymmetric RNA probes. | Dev Biol | 1984 | https://conductscience.org/library/papers/6692991 | PubMed |
| 12 | 2,231,712 | Basic local alignment search tool. | J Mol Biol | 1990 | https://conductscience.org/library/papers/2231712 | PubMed |
| 13 | 9,554,849 | Visualization of single RNA transcripts in situ. | Science | 1998 | https://conductscience.org/library/papers/9554849 | PubMed |
| 14 | 18,593,893 | Single-cell transcription site activation predicts chemotherapy response in human colorectal tumors. | Cancer Res | 2008 | https://conductscience.org/library/papers/18593893 | PubMed |
| 15 | 19,261,174 | Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. | Genome Biol | 2009 | https://conductscience.org/library/papers/19261174 | PubMed |
| 16 | 18,641,955 | Fluorescent in situ hybridization protocols in Drosophila embryos and tissues. | Methods Mol Biol | 2008 | https://conductscience.org/library/papers/18641955 | PubMed |
| 17 | 3,117,618 | Distribution of the Sex combs reduced gene products in Drosophila melanogaster. | Genetics | 1987 | https://conductscience.org/library/papers/3117618 | PubMed |
| 18 | 16,636,294 | Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes. | Proc Natl Acad Sci U S A | 2006 | https://conductscience.org/library/papers/16636294 | PubMed |
| 19 | 19,931,455 | Visualization of individual Scr mRNAs during Drosophila embryogenesis yields evidence for transcriptional bursting. | Curr Biol | 2009 | https://conductscience.org/library/papers/19931455 | PubMed |
| 20 | 1,680,047 | Control of the expression of the bithorax complex genes abdominal-A and abdominal-B by cis-regulatory regions in Drosophila embryos. | Development | 1991 | https://conductscience.org/library/papers/1680047 | PubMed |
Cited by12
The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 23 citations.
| PMID | Title | Journal | Year | In Papers | Source |
|---|---|---|---|---|---|
| 42,547,688 | Artificial intelligence-based diagnostic model for identifying PTPRZ1-MET fusion in a clinically defined secondary glioblastoma cohort. | Mol Biomed | 2026 | https://conductscience.org/library/papers/42547688 | PubMed |
| 36,461,702 | LAFITE Reveals the Complexity of Transcript Isoforms in Subcellular Fractions. | Adv Sci (Weinh) | 2023 | https://conductscience.org/library/papers/36461702 | PubMed |
| 36,295,109 | Selective RNA Labeling by RNA-Compatible Type II Restriction Endonuclease and RNA-Extending DNA Polymerase. | Life (Basel) | 2022 | https://conductscience.org/library/papers/36295109 | PubMed |
| 33,645,009 | High-sensitive clinical diagnostic method for PTPRZ1-MET and the characteristic protein structure contributing to ligand-independent MET activation. | CNS Neurosci Ther | 2021 | https://conductscience.org/library/papers/33645009 | PubMed |
| 32,916,079 | Mosaicism in Human Health and Disease. | Annu Rev Genet | 2020 | https://conductscience.org/library/papers/32916079 | PubMed |
| 30,393,032 | Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis. | Curr Biol | 2018 | https://conductscience.org/library/papers/30393032 | PubMed |
| 30,026,820 | Gene Expression Detection Assay for Cancer Clinical Use. | J Cancer | 2018 | https://conductscience.org/library/papers/30026820 | PubMed |
| 29,463,736 | OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes. | Proc Natl Acad Sci U S A | 2018 | https://conductscience.org/library/papers/29463736 | PubMed |
| 26,690,072 | Quantitative spatial analysis of transcripts in multinucleate cells using single-molecule FISH. | Methods | 2016 | https://conductscience.org/library/papers/26690072 | PubMed |
| 25,825,715 | Unraveling the association between mRNA expressions and mutant phenotypes in a genome-wide assessment of mice. | Proc Natl Acad Sci U S A | 2015 | https://conductscience.org/library/papers/25825715 | PubMed |
| 21,559,756 | Quantifying mRNA levels across tissue sections with 2D-RT-qPCR. | Anal Bioanal Chem | 2011 | https://conductscience.org/library/papers/21559756 | PubMed |
| 21,390,295 | The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA. | PLoS Biol | 2011 | https://conductscience.org/library/papers/21390295 | PubMed |
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The date of each source this release read.
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- 2026-11-12
- Gene search
- 2026-11-11
- Pipelines
- 2026-09-18
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- Comments and corrections
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- Data
Sources 11
- ChEMBL, through Open TargetsCC BY-SA 3.0
- ClinicalTrials.govNo license stated
- HGNCCC0
- iCiteCC BY 4.0
- NCBI GenePublic domain (US government)
- NIH RePORTER's grant and paper linksPublic domain
- Open TargetsCC0 1.0
- PMC's ID filePublic domain (US government)
- PubMedNLM's terms
- PubTator 3Public domain
- UniProtCC BY 4.0
Each source's terms
- ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
- ClinicalTrials.govnone stated
- HGNCCC0: https://www.genenames.org/about/license/
- iCiteCC BY 4.0
- NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
- NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
- Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
- PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
- PubMedNLM's terms
- PubTator 3Public domain
- UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license
ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.
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