Paper · 28544705
Sma3s: A universal tool for easy functional annotation of proteomes and transcriptomes.
Casimiro-Soriguer CS and 2 others. Proteomics, 2017. Cited by 79 papers, by iCite.
11 sourcespapers-2026-11-12-0.1.0
Cite this record
ConductScience Library. Sma3s: A universal tool for easy functional annotation of proteomes and transcriptomes. Papers, record 28544705. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/28544705
On this page
Paper
PubMed's record of the paper, with iCite's citation figures. No abstract is shown.
Topics8
NLM's MeSH indexing of the paper, its major topics first.
| MeSH term | Major |
|---|---|
| Bacterial Proteins | Major topic |
| Molecular Sequence Annotation | Major topic |
| Proteome | Major topic |
| Software | Major topic |
| Transcriptome | Major topic |
| Bacillus subtilis | |
| Computational Biology | |
| High-Throughput Nucleotide Sequencing |
Source PubMed
Grants0
Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.
None in this release.
Trials0
The trials whose ClinicalTrials.gov record lists the paper, and the trial numbers the paper's PubMed record names.
None in this release.
Comments and corrections0
PubMed's comments and corrections, NLM's own indexing: retractions first, then expressions of concern, errata and updates, and comments last.
None in this release.
References0
The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.
None in this release.
Cited by52
The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 79 citations.
| PMID | Title | Journal | Year | In Papers | Source |
|---|---|---|---|---|---|
| 42,967,996 | Salinity-associated differential gene expression in natural populations of the euryhaline killifish Aphanius iberus. | BMC Genomics | 2026 | https://conductscience.org/library/papers/42967996 | PubMed |
| 42,126,263 | Beyond genomes: functional signatures reveal evolutionary patterns across the tree of life. | Mol Biol Evol | 2026 | https://conductscience.org/library/papers/42126263 | PubMed |
| 41,951,994 | Mycobacterium cajalii sp. nov., a novel scotochromogenic rapid-growing nontuberculous mycobacterial species closely related to Mycobacterium servetii. | Antonie Van Leeuwenhoek | 2026 | https://conductscience.org/library/papers/41951994 | PubMed |
| 41,923,934 | Contrasting leaf transcriptomic responses to drought and heat stress in the desert CAM species Mesembryanthemum forsskalii. | Front Plant Sci | 2026 | https://conductscience.org/library/papers/41923934 | PubMed |
| 41,744,644 | A Porcine-Isolated Mycobacterium bovis Strain Exhibits Hypervirulence in a Murine Pulmonary Tuberculosis Model. | Biology (Basel) | 2026 | https://conductscience.org/library/papers/41744644 | PubMed |
| 41,476,104 | Exploring the pangenome of Mycoplasma hyorhinis in search of potential virulence markers. | Sci Rep | 2025 | https://conductscience.org/library/papers/41476104 | PubMed |
| 41,362,773 | Single-cell transcriptome atlas of adult male and female human hookworm Ancylostoma ceylanicum. | iScience | 2025 | https://conductscience.org/library/papers/41362773 | PubMed |
| 41,299,775 | Unveiling essential host genes and keystone microorganisms of the olive tree holobiont linked to Verticillium wilt tolerance. | Microbiome | 2025 | https://conductscience.org/library/papers/41299775 | PubMed |
| 41,219,817 | Dna methylation dynamics associated with visual system remodeling during flatfish metamorphosis. | Epigenetics Chromatin | 2025 | https://conductscience.org/library/papers/41219817 | PubMed |
| 40,893,232 | Subtractive Proteomic Approaches to Identify Drug Targets: An Analysis on Hypothetical Proteins of Multidrug-Resistant P. aeruginosa. | ACS Omega | 2025 | https://conductscience.org/library/papers/40893232 | PubMed |
1 to 10 of 52
See all 52 cited byGenes0
The genes the Gene search release ties to the paper: Swiss-Prot's references first, then PubTator's text mining.
None in this release.
Drugs0
The drugs whose trials, in the Pipelines release, list the paper.
None in this release.
Data0
The data bank entries PubMed's record names. Trial numbers are under Trials.
None in this release.
Data dates
The date of each source this release read.
- Trials
- 2026-11-12
- Gene search
- 2026-11-11
- Pipelines
- 2026-09-18
Sources 11
- ChEMBL, through Open TargetsCC BY-SA 3.0
- ClinicalTrials.govNo license stated
- HGNCCC0
- iCiteCC BY 4.0
- NCBI GenePublic domain (US government)
- NIH RePORTER's grant and paper linksPublic domain
- Open TargetsCC0 1.0
- PMC's ID filePublic domain (US government)
- PubMedNLM's terms
- PubTator 3Public domain
- UniProtCC BY 4.0
Each source's terms
- ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
- ClinicalTrials.govnone stated
- HGNCCC0: https://www.genenames.org/about/license/
- iCiteCC BY 4.0
- NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
- NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
- Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
- PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
- PubMedNLM's terms
- PubTator 3Public domain
- UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license
ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.
For software
Read this paper from software.
The record and each of its lists are JSON, twenty rows a page. No key.
GET https://conductscience.org/api/papers/v1/28544705
GET https://conductscience.org/api/papers/v1/28544705/cited_by?page=2