Paper · 36938885

Single-molecule visualization of stalled replication-fork rescue by the Escherichia coli Rep helicase.

Whinn KS and 7 others. Nucleic Acids Res, 2023. Cited by 10 papers, by iCite.

11 sourcespapers-2026-11-12-0.1.0

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ConductScience Library. Single-molecule visualization of stalled replication-fork rescue by the Escherichia coli Rep helicase. Papers, record 36938885. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/36938885

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Paper

PubMed's record of the paper, with iCite's citation figures. No abstract is shown.

Title: Single-molecule visualization of stalled replication-fork rescue by the Escherichia coli Rep helicase.; PubMed
Journal: Nucleic Acids Res; PubMed
Year: 2023; PubMed
Publication types: Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't; PubMed
PubMed: https://pubmed.ncbi.nlm.nih.gov/36938885/; PubMed
DOI: https://doi.org/10.1093/nar/gkad186; PubMed
PMC: https://pmc.ncbi.nlm.nih.gov/articles/PMC10123100/; PubMed
The journal: https://conductscience.org/library/journal-index/0411011; PubMed
Citations, by iCite: 10; iCite
Relative citation ratio, by iCite: 0.84; iCite
Revised in PubMed: 2023-04-28; PubMed

Authors8

The authors in the order PubMed's record lists them, with the ORCID iDs it states.

Order	Author	Forename	ORCID iD
1	Whinn KS	Kelsey S	https://orcid.org/0000-0003-4032-0212
2	Xu ZQ	Zhi-Qiang	https://orcid.org/0000-0002-5884-0569
3	Jergic S	Slobodan
4	Sharma N	Nischal	https://orcid.org/0000-0002-7670-5571
5	Spenkelink LM	Lisanne M
6	Dixon NE	Nicholas E	https://orcid.org/0000-0002-5958-6945
7	van Oijen AM	Antoine M
8	Ghodke H	Harshad	https://orcid.org/0000-0002-6628-876X

Source PubMed

Topics5

NLM's MeSH indexing of the paper, its major topics first.

MeSH term	Major
DNA Helicases	Major topic
Escherichia coli Proteins	Major topic
DNA
DNA Replication
Escherichia coli

Source PubMed

Grants1

Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.

Grant, as the record writes it	Agency	Country	NIH project	Stated by
RM1 GM130450	NIGMS NIH HHS	United States	RM1GM130450	PubMed and NIH

Source NIH RePORTER

Trials0

The trials whose ClinicalTrials.gov record lists the paper, and the trial numbers the paper's PubMed record names.

None in this release.

Comments and corrections0

PubMed's comments and corrections, NLM's own indexing: retractions first, then expressions of concern, errata and updates, and comments last.

None in this release.

References76

The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.

Order	PMID	Title	Journal	Year	In Papers	Source
1	32,913,126	Pif1, RPA, and FEN1 modulate the ability of DNA polymerase δ to overcome protein barriers during DNA synthesis.	J Biol Chem	2020	https://conductscience.org/library/papers/32913126	PubMed
2	18,275,130	Efficient site-specific labeling of proteins via cysteines.	Bioconjug Chem	2008	https://conductscience.org/library/papers/18275130	PubMed
3	18,223,657	Single-molecule studies of fork dynamics in Escherichia coli DNA replication.	Nat Struct Mol Biol	2008	https://conductscience.org/library/papers/18223657	PubMed
4	1,533,057	Allosteric effects of nucleotide cofactors on Escherichia coli Rep helicase-DNA binding.	Science	1992	https://conductscience.org/library/papers/1533057	PubMed
5	16,851,054	Detection of intensity change points in time-resolved single-molecule measurements.	J Phys Chem B	2005	https://conductscience.org/library/papers/16851054	PubMed
6	11,886,566	Replication arrests during a single round of replication of the Escherichia coli chromosome in the absence of DnaC activity.	Mol Microbiol	2001	https://conductscience.org/library/papers/11886566	PubMed
7	19,406,929	Replication fork reversal and the maintenance of genome stability.	Nucleic Acids Res	2009	https://conductscience.org/library/papers/19406929	PubMed
8	31,783,299	Different mechanisms for translocation by monomeric and hexameric helicases.	Curr Opin Struct Biol	2020	https://conductscience.org/library/papers/31783299	PubMed
9	31,028,385	Single-molecule live cell imaging of Rep reveals the dynamic interplay between an accessory replicative helicase and the replisome.	Nucleic Acids Res	2019	https://conductscience.org/library/papers/31028385	PubMed
10	19,666,586	Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression.	Proc Natl Acad Sci U S A	2009	https://conductscience.org/library/papers/19666586	PubMed

1 to 10 of 76

See all 76 references

Cited by10

The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 10 citations.

PMID	Title	Journal	Year	In Papers	Source
42,779,690	A superfamily 1 helicase translocates on double-stranded DNA.	bioRxiv	2026	https://conductscience.org/library/papers/42779690	PubMed
42,243,109	ATP is dispensable for E. coli DNA replication and eukaryotic helicase activity.	Nat Commun	2026	https://conductscience.org/library/papers/42243109	PubMed
40,288,511	nCas9-based method for rolling-circle DNA substrate generation.	Anal Biochem	2025	https://conductscience.org/library/papers/40288511	PubMed
39,582,266	Clues to transcription/replication collision-induced DNA damage: it was RNAP, in the chromosome, with the fork.	FEBS Lett	2025	https://conductscience.org/library/papers/39582266	PubMed
39,380,487	Visualization of Type IV-A1 CRISPR-mediated repression of gene expression and plasmid replication.	Nucleic Acids Res	2024	https://conductscience.org/library/papers/39380487	PubMed
39,328,428	Insight into Single-Molecule Imaging Techniques for the Study of Prokaryotic Genome Maintenance.	Chem Biomed Imaging	2024	https://conductscience.org/library/papers/39328428	PubMed
38,982,189	Escherichia coli DNA replication: the old model organism still holds many surprises.	FEMS Microbiol Rev	2024	https://conductscience.org/library/papers/38982189	PubMed
38,808,668	Dysregulated DnaB unwinding induces replisome decoupling and daughter strand gaps that are countered by RecA polymerization.	Nucleic Acids Res	2024	https://conductscience.org/library/papers/38808668	PubMed
38,052,445	Processing of stalled replication forks in Bacillus subtilis.	FEMS Microbiol Rev	2024	https://conductscience.org/library/papers/38052445	PubMed
37,971,892	Embracing Heterogeneity: Challenging the Paradigm of Replisomes as Deterministic Machines.	Chem Rev	2023	https://conductscience.org/library/papers/37971892	PubMed

Genes0

The genes the Gene search release ties to the paper: Swiss-Prot's references first, then PubTator's text mining.

None in this release.

Drugs0

The drugs whose trials, in the Pipelines release, list the paper.

None in this release.

Data0

The data bank entries PubMed's record names. Trial numbers are under Trials.

None in this release.

Data dates

The date of each source this release read.

PubMed: 2026-11-06; PubMed
iCite: 2026-11-05; iCite
PMC's ID file: 2026-11-05; PMC's ID file
NIH RePORTER's grant and paper links: 2026-11-01; NIH RePORTER's grant and paper links
Trials: 2026-11-12
Gene search: 2026-11-11
Pipelines: 2026-09-18

Sources 11

ChEMBL, through Open TargetsCC BY-SA 3.0
ClinicalTrials.govNo license stated
HGNCCC0
iCiteCC BY 4.0
NCBI GenePublic domain (US government)
NIH RePORTER's grant and paper linksPublic domain
Open TargetsCC0 1.0
PMC's ID filePublic domain (US government)
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0

Each source's terms

ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
ClinicalTrials.govnone stated
HGNCCC0: https://www.genenames.org/about/license/
iCiteCC BY 4.0
NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license

ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.

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