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Paper · 36948700

DeGlyPHER: Highly sensitive site-specific analysis of N-linked glycans on proteins.

Baboo S and 8 others. Methods Enzymol, 2023. Cited by 10 papers, by iCite.

11 sourcespapers-2026-11-12-0.1.0

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ConductScience Library. DeGlyPHER: Highly sensitive site-specific analysis of N-linked glycans on proteins. Papers, record 36948700. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/36948700

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Paper

PubMed's record of the paper, with iCite's citation figures. No abstract is shown.

Title
DeGlyPHER: Highly sensitive site-specific analysis of N-linked glycans on proteins.
PubMed
Journal
Methods Enzymol
PubMed
Year
2023
PubMed
Publication types
Journal Article, Research Support, N.I.H., Extramural
PubMed
Citations, by iCite
10
iCite
Relative citation ratio, by iCite
0.87
iCite
Revised in PubMed
2024-04-26
PubMed

Authors9

The authors in the order PubMed's record lists them, with the ORCID iDs it states.

OrderAuthorForenameKindORCID iD
1Baboo SSabyasachi
2Diedrich JKJolene K
3Martínez-Bartolomé SSalvador
4Wang XXiaoning
5Schiffner TTorben
6Groschel BBettina
7Schief WRWilliam R
8Paulson JCJames C
9Yates JR 3rdJohn R

Source PubMed

Topics5

NLM's MeSH indexing of the paper, its major topics first.

MeSH termMajor
Spike Glycoprotein, CoronavirusMajor topic
GlycoproteinsMajor topic
Glycosylation
Polysaccharides
Mass Spectrometry

Source PubMed

Grants7

Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.

Grant, as the record writes itAgencyCountryNIH projectStated bySource
P41 GM103533NIGMS NIH HHSUnited StatesP41GM103533PubMed and NIHNIH RePORTER
UM1 AI144462NIAID NIH HHSUnited StatesUM1AI144462PubMed and NIHNIH RePORTER
UM1 AI100663NIAID NIH HHSUnited StatesUM1AI100663PubMed and NIHNIH RePORTER
R01 AI113867NIAID NIH HHSUnited StatesR01AI113867PubMed and NIHNIH RePORTER
R01 AI106633NIAID NIH HHSUnited StatesR01AI106633PubMedNIH RePORTER
R56 AI113867NIAID NIH HHSUnited StatesR01AI113867PubMed and NIHNIH RePORTER
R56AI113867NIHNIH RePORTER

Trials0

The trials whose ClinicalTrials.gov record lists the paper, and the trial numbers the paper's PubMed record names.

None in this release.

Comments and corrections0

PubMed's comments and corrections, NLM's own indexing: retractions first, then expressions of concern, errata and updates, and comments last.

None in this release.

References158

The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.

OrderPMIDTitleJournalYearIn PapersSource
126,085,151Cell- and Protein-Directed Glycosylation of Native Cleaved HIV-1 Envelope.J Virol2015https://conductscience.org/library/papers/26085151PubMed
219,082,980Proteinase K (EC 3.4.21.14).Methods Mol Biol1993https://conductscience.org/library/papers/19082980PubMed
31,443,554
A method for determination of N-glycosylation sites in glycoproteins by collision-induced dissociation analysis in fast atom bombardment mass spectrometry: identification of the positions of carbohydrate-linked asparagine in recombinant alpha-amylase by treatment with peptide-N-glycosidase F in 18O-labeled water.
Anal Biochem1992https://conductscience.org/library/papers/1443554PubMed
435,393,418Glyco-Decipher enables glycan database-independent peptide matching and in-depth characterization of site-specific N-glycosylation.Nat Commun2022https://conductscience.org/library/papers/35393418PubMed
515,043,007Virus entry: molecular mechanisms and biomedical applications.Nat Rev Microbiol2004https://conductscience.org/library/papers/15043007PubMed
614,987,077Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides.Anal Chem2004https://conductscience.org/library/papers/14987077PubMed
74,373,242Proteinase K from Tritirachium album Limber.Eur J Biochem1974https://conductscience.org/library/papers/4373242PubMed
822,470,127Use of CID/ETD mass spectrometry to analyze glycopeptides.Curr Protoc Protein Sci2012https://conductscience.org/library/papers/22470127PubMed
934,282,822The Hitchhiker's guide to glycoproteomics.Biochem Soc Trans2021https://conductscience.org/library/papers/34282822PubMed
1030,049,419HIV.Lancet2018https://conductscience.org/library/papers/30049419PubMed

1 to 10 of 158

See all 158 references

Cited by5

The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 10 citations.

PMIDTitleJournalYearIn PapersSource
42,265,107Diverse germline-targeting HIV Env immunogens select for distinct mutations in the same knock-in mice B cell receptors.Nat Commun2026https://conductscience.org/library/papers/42265107PubMed
41,187,081Mapping the placental galectin-3 interactome identifies CD9 and ITGB1 as functional glycoprotein counterreceptors during syncytialization.Proc Natl Acad Sci U S A2025https://conductscience.org/library/papers/41187081PubMed
40,618,371Structural and functional insights into the evolution of SARS-CoV-2 KP.3.1.1 spike protein.Cell Rep2025https://conductscience.org/library/papers/40618371PubMed
39,283,948Repeat modules and N-linked glycans define structure and antigenicity of a critical enterotoxigenic E. coli adhesin.PLoS Pathog2024https://conductscience.org/library/papers/39283948PubMed
38,766,097Repeat modules and N-linked glycans define structure and antigenicity of a critical enterotoxigenic E. coli adhesin.bioRxiv2024https://conductscience.org/library/papers/38766097PubMed

Genes0

The genes the Gene search release ties to the paper: Swiss-Prot's references first, then PubTator's text mining.

None in this release.

Drugs0

The drugs whose trials, in the Pipelines release, list the paper.

None in this release.

Data0

The data bank entries PubMed's record names. Trial numbers are under Trials.

None in this release.

Data dates

The date of each source this release read.

PubMed
2026-11-06
PubMed
iCite
2026-11-05
iCite
PMC's ID file
2026-11-05
PMC's ID file
NIH RePORTER's grant and paper links
2026-11-01
NIH RePORTER's grant and paper links
Trials
2026-11-12
Gene search
2026-11-11
Pipelines
2026-09-18

Sources 11

  • ChEMBL, through Open TargetsCC BY-SA 3.0
  • ClinicalTrials.govNo license stated
  • HGNCCC0
  • iCiteCC BY 4.0
  • NCBI GenePublic domain (US government)
  • NIH RePORTER's grant and paper linksPublic domain
  • Open TargetsCC0 1.0
  • PMC's ID filePublic domain (US government)
  • PubMedNLM's terms
  • PubTator 3Public domain
  • UniProtCC BY 4.0
Each source's terms
  • ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
  • ClinicalTrials.govnone stated
  • HGNCCC0: https://www.genenames.org/about/license/
  • iCiteCC BY 4.0
  • NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
  • NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
  • Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
  • PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
  • PubMedNLM's terms
  • PubTator 3Public domain
  • UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license

ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.

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