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Paper40366183

Optimizing experimental conditions: the role of buffered environments in microbial isolation, physiological studies, and taxonomic characterization.

Prakash O and 3 others. Appl Environ Microbiol, 2025. Cited by 5 papers, by iCite.

11 sourcespapers-2026-11-12-0.1.0

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ConductScience Library. Optimizing experimental conditions: the role of buffered environments in microbial isolation, physiological studies, and taxonomic characterization. Papers, record 40366183. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/40366183

Paper

PubMed's record of the paper, with iCite's citation figures. No abstract is shown.

Title
Optimizing experimental conditions: the role of buffered environments in microbial isolation, physiological studies, and taxonomic characterization.
PubMed
Journal
Appl Environ Microbiol
PubMed
Year
2025
PubMed
Publication types
Journal Article, Review, Research Support, Non-U.S. Gov't
PubMed
Citations, by iCite
5
iCite
Relative citation ratio, by iCite
1.6, provisional
iCite
Revised in PubMed
2026-10-30
PubMed

Authors4

The authors in the order PubMed's record lists them, with the ORCID iDs it states.

OrderAuthorForenameKindORCID iD
1Prakash OOmhttps://orcid.org/0000-0002-6568-0567
2Waghmare UUjjwalahttps://orcid.org/0009-0005-9249-1533
3Chauhan AAshvini
4Patil YYogesh

Source PubMed

Topics6

NLM's MeSH indexing of the paper, its major topics first.

MeSH termMajor
Culture MediaMajor topic
BacteriaMajor topic
Microbiological TechniquesMajor topic
Bacteriological TechniquesMajor topic
Buffers
Hydrogen-Ion Concentration

Source PubMed

Grants1

Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.

Grant, as the record writes itAgencyCountryNIH projectStated by
Symbiosis International (Deemed University)PubMed

Source PubMed

References48

The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.

OrderPMIDTitleJournalYearIn PapersSource
121,377,362Effect of temperature, pH and buffer presence on ethanol production from synthesis gas by "Clostridium ragsdalei".Bioresour Technol2011https://conductscience.org/library/papers/21377362PubMed
225,741,588Divergent responses of soil buffering capacity to long-term N deposition in three typical tropical forests with different land-use history.Environ Sci Technol2015https://conductscience.org/library/papers/25741588PubMed
323,086Influence of inorganic phosphate and organic buffers on cephalosporin production by Streptomyces clavuligerus.Arch Microbiol1977https://conductscience.org/library/papers/23086PubMed
437,951,952A genomic catalogue of soil microbiomes boosts mining of biodiversity and genetic resources.Nat Commun2023https://conductscience.org/library/papers/37951952PubMed
57,446,957Hydrogen ion buffers for biological research.Anal Biochem1980https://conductscience.org/library/papers/7446957PubMed
622,140,175Rhodanobacter denitrificans sp. nov., isolated from nitrate-rich zones of a contaminated aquifer.Int J Syst Evol Microbiol2012https://conductscience.org/library/papers/22140175PubMed
726,194The effect of pH and potassium phosphate buffer on the toxicity of cadmium for bacteria.Acta Vet Scand1978https://conductscience.org/library/papers/26194PubMed
823,587,826Influence of bicarbonate buffer on the methanogenetic pathway during thermophilic anaerobic digestion.Bioresour Technol2013https://conductscience.org/library/papers/23587826PubMed
930,726,253Effect of various mulches on soil physico-Chemical properties and tree growth (Sophora japonica) in urban tree pits.PLoS One2019https://conductscience.org/library/papers/30726253PubMed
1035,977,655A culture-based and culture-independent approach to the study of landfill leachate bacterial and archaeal communities.Anaerobe2022https://conductscience.org/library/papers/35977655PubMed
113,900,275Sources of conductance changes during bacterial reduction of trimethylamine oxide to trimethylammonium in phosphate buffer.J Gen Microbiol1985https://conductscience.org/library/papers/3900275PubMed
1238,348,306Culture-based and culture-independent approach for the study of the methanogens and obligate anaerobes from different landfill sites.Front Microbiol2023https://conductscience.org/library/papers/38348306PubMed
1323,083,094Practice and prospects of microbial preservation.FEMS Microbiol Lett2013https://conductscience.org/library/papers/23083094PubMed
1427,894,967Role of Buffers in Protein Formulations.J Pharm Sci2017https://conductscience.org/library/papers/27894967PubMed
1525,098,268The functional basis of adaptive evolution in chemostats.FEMS Microbiol Rev2015https://conductscience.org/library/papers/25098268PubMed
163,522,525Selection of pH buffers for use in conductimetric microbiological assays.J Appl Bacteriol1986https://conductscience.org/library/papers/3522525PubMed
1732,082,601Influence of carbon type and carbon to nitrogen ratio on the biochemical methane potential, pH, and ammonia nitrogen in anaerobic digestion.J Anim Sci Technol2020https://conductscience.org/library/papers/32082601PubMed
1816,980,446pH-dependent activation of the BarA-UvrY two-component system in Escherichia coli.J Bacteriol2006https://conductscience.org/library/papers/16980446PubMed
1930,291,118Effective Soil Extraction Method for Cultivating Previously Uncultured Soil Bacteria.Appl Environ Microbiol2018https://conductscience.org/library/papers/30291118PubMed
2026,535,110Effect of environmental and cultural conditions on medium pH and explant growth performance of Douglas-fir ( Pseudotsuga menziesii) shoot cultures.F1000Res2014https://conductscience.org/library/papers/26535110PubMed

See all 48 references

Cited by5

The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 5 citations.

PMIDTitleJournalYearIn PapersSource
42,688,299Prolonged ex vivo lung perfusion with corrected perfusate: functional and structural benefits in swine.Front Transplant2026https://conductscience.org/library/papers/42688299PubMed
42,630,450Engineered Aspergillus niger enables high-yield heterologous kojic acid production.Synth Syst Biotechnol2026https://conductscience.org/library/papers/42630450PubMed
42,104,005Polycationic nanopeptide-fused endolysins for the control of Mannheimia haemolytica.Appl Microbiol Biotechnol2026https://conductscience.org/library/papers/42104005PubMed
41,892,441Probiotic and Postbiotic Interactions of Lactobacillus Strains with Candida albicans: Antifungal Effects Through Microbial Competition.Antibiotics (Basel)2026https://conductscience.org/library/papers/41892441PubMed
41,615,027Discovery and cultivation of prokaryotic taxa in the age of metagenomics and artificial intelligence.ISME J2025https://conductscience.org/library/papers/41615027PubMed

Data dates

The date of each source this release read.

PubMed
2026-11-06
PubMed
iCite
2026-11-05
iCite
PMC's ID file
2026-11-05
PMC's ID file
NIH RePORTER's grant and paper links
2026-11-01
NIH RePORTER's grant and paper links
Trials
2026-11-12
Gene search
2026-11-11
Pipelines
2026-09-18

None in this release

  • Trials
  • Comments and corrections
  • Genes
  • Drugs
  • Data

Sources 11

  • ChEMBL, through Open TargetsCC BY-SA 3.0
  • ClinicalTrials.govNo license stated
  • HGNCCC0
  • iCiteCC BY 4.0
  • NCBI GenePublic domain (US government)
  • NIH RePORTER's grant and paper linksPublic domain
  • Open TargetsCC0 1.0
  • PMC's ID filePublic domain (US government)
  • PubMedNLM's terms
  • PubTator 3Public domain
  • UniProtCC BY 4.0
Each source's terms
  • ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
  • ClinicalTrials.govnone stated
  • HGNCCC0: https://www.genenames.org/about/license/
  • iCiteCC BY 4.0
  • NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
  • NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
  • Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
  • PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
  • PubMedNLM's terms
  • PubTator 3Public domain
  • UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license

ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.

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