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Paper · 28061332

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways.

Chao Y and 11 others. Mol Cell, 2017. Cited by 225 papers, by iCite.

11 sourcespapers-2026-11-12-0.1.0

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ConductScience Library. In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Papers, record 28061332. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/28061332

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Paper

PubMed's record of the paper, with iCite's citation figures. No abstract is shown.

Title
In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways.
PubMed
Journal
Mol Cell
PubMed
Year
2017
PubMed
Publication types
Journal Article
PubMed
Citations, by iCite
225
iCite
Relative citation ratio, by iCite
7.87
iCite
Revised in PubMed
2021-01-09
PubMed

Authors12

The authors in the order PubMed's record lists them, with the ORCID iDs it states.

OrderAuthorForenameKindORCID iD
1Chao YYanjie
2Li LLei
3Girodat DDylan
4Förstner KUKonrad U
5Said NNelly
6Corcoran CColin
7Śmiga MMichał
8Papenfort KKai
9Reinhardt RRichard
10Wieden HJHans-Joachim

1 to 10 of 12Source PubMed

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Topics18

NLM's MeSH indexing of the paper, its major topics first.

MeSH termMajor
Bacterial ProteinsMajor topic
EndoribonucleasesMajor topic
RNA PrecursorsMajor topic
RNA, BacterialMajor topic
RNA, MessengerMajor topic
RNA, Small UntranslatedMajor topic
Salmonella entericaMajor topic
3' Untranslated Regions
Catalysis
Computational Biology
Databases, Genetic
Gene Expression Regulation, Bacterial
Host Factor 1 Protein
Molecular Dynamics Simulation
Nucleic Acid Conformation
Structure-Activity Relationship
Transcriptome
Uridine

Source PubMed

Grants1

Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.

Grant, as the record writes itAgencyCountryNIH projectStated by
200873/Z/16/ZWellcome TrustUnited KingdomPubMed

Source PubMed

Trials0

The trials whose ClinicalTrials.gov record lists the paper, and the trial numbers the paper's PubMed record names.

None in this release.

Comments and corrections0

PubMed's comments and corrections, NLM's own indexing: retractions first, then expressions of concern, errata and updates, and comments last.

None in this release.

References88

The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.

OrderPMIDTitleJournalYearIn PapersSource
125,630,703Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA.EMBO J2015https://conductscience.org/library/papers/25630703PubMed
221,685,451S1 ribosomal protein and the interplay between translation and mRNA decay.Nucleic Acids Res2011https://conductscience.org/library/papers/21685451PubMed
317,395,638Polyadenylation of a functional mRNA controls gene expression in Escherichia coli.Nucleic Acids Res2007https://conductscience.org/library/papers/17395638PubMed
424,709,835An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3.Nat Commun2014https://conductscience.org/library/papers/24709835PubMed
517,982,174Characterization of the role of ribonucleases in Salmonella small RNA decay.Nucleic Acids Res2007https://conductscience.org/library/papers/17982174PubMed
625,402,616Tunable protein degradation in bacteria.Nat Biotechnol2014https://conductscience.org/library/papers/25402616PubMed
711,251,852Regulation of RpoS by a novel small RNA: the characterization of RprA.Mol Microbiol2001https://conductscience.org/library/papers/11251852PubMed
824,586,213Transcriptome-wide analyses of 5'-ends in RNase J mutants of a gram-positive pathogen reveal a role in RNA maturation, regulation and degradation.PLoS Genet2014https://conductscience.org/library/papers/24586213PubMed
925,583,150Genome-wide study of mRNA degradation and transcript elongation in Escherichia coli.Mol Syst Biol2015https://conductscience.org/library/papers/25583150PubMed
1025,934,124Target activation by regulatory RNAs in bacteria.FEMS Microbiol Rev2015https://conductscience.org/library/papers/25934124PubMed

1 to 10 of 88

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Cited by181

The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 225 citations.

PMIDTitleJournalYearIn PapersSource
42,926,703Autoregulation of RNase E synthesis: Predominant impact of a branched RNA stem-loop to which the nuclease binds.bioRxiv2026https://conductscience.org/library/papers/42926703PubMed
42,866,694Decoding how RNase E membrane targeting controls RNA degradosome activity in Pseudomonas aeruginosa.iScience2026https://conductscience.org/library/papers/42866694PubMed
42,733,058A glycolytic intermediate gatekeeps global mRNA decay in Escherichia coli.Nat Commun2026https://conductscience.org/library/papers/42733058PubMed
42,263,604In vitro cleavage requirements and specificities of mycobacterial RNase E.Biochem Biophys Res Commun2026https://conductscience.org/library/papers/42263604PubMed
42,230,597Stress-induced ribosome degradation in Bacillus subtilis is mediated by the RNase Y-specificity complex.Nat Commun2026https://conductscience.org/library/papers/42230597PubMed
42,167,936Identification of proteins interacting with the N-terminal half of endoribonuclease RNase E in Escherichia coli.RNA Biol2026https://conductscience.org/library/papers/42167936PubMed
41,459,7483'UTR-derived small RNA couples acid resistance to metabolic reprogramming of Salmonella within macrophages.Nucleic Acids Res2025https://conductscience.org/library/papers/41459748PubMed
41,428,736Intramacrophage RIL-seq uncovers an RNA antagonist of the Salmonella virulence-associated small RNA PinT.Nucleic Acids Res2025https://conductscience.org/library/papers/41428736PubMed
41,391,147Rif-seq reveals Caulobacter crescentus mRNA decay is globally coordinated with transcription and translation.Cell Rep2025https://conductscience.org/library/papers/41391147PubMed
41,343,676Origin and adaptive evolutionary trajectory of the 3' UTR-derived sRNA UhpU in Enterobacteriaceae.Proc Natl Acad Sci U S A2025https://conductscience.org/library/papers/41343676PubMed

1 to 10 of 181

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Genes2

The genes the Gene search release ties to the paper: Swiss-Prot's references first, then PubTator's text mining.

GeneNCBI Gene IDLinked byIn GenesSource
PPP1R85,511PubTator's text mininghttps://conductscience.org/library/genes/5511NCBI Gene
RNASEL6,041PubTator's text mininghttps://conductscience.org/library/genes/6041NCBI Gene

Drugs0

The drugs whose trials, in the Pipelines release, list the paper.

None in this release.

Data0

The data bank entries PubMed's record names. Trial numbers are under Trials.

None in this release.

Data dates

The date of each source this release read.

PubMed
2026-11-06
PubMed
iCite
2026-11-05
iCite
PMC's ID file
2026-11-05
PMC's ID file
NIH RePORTER's grant and paper links
2026-11-01
NIH RePORTER's grant and paper links
Trials
2026-11-12
Gene search
2026-11-11
Pipelines
2026-09-18

Sources 11

  • ChEMBL, through Open TargetsCC BY-SA 3.0
  • ClinicalTrials.govNo license stated
  • HGNCCC0
  • iCiteCC BY 4.0
  • NCBI GenePublic domain (US government)
  • NIH RePORTER's grant and paper linksPublic domain
  • Open TargetsCC0 1.0
  • PMC's ID filePublic domain (US government)
  • PubMedNLM's terms
  • PubTator 3Public domain
  • UniProtCC BY 4.0
Each source's terms
  • ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
  • ClinicalTrials.govnone stated
  • HGNCCC0: https://www.genenames.org/about/license/
  • iCiteCC BY 4.0
  • NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
  • NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
  • Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
  • PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
  • PubMedNLM's terms
  • PubTator 3Public domain
  • UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license

ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.

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