Paper · 30989184

IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences.

Vitting-Seerup K and 1 other. Bioinformatics, 2019. Cited by 267 papers, by iCite.

11 sourcespapers-2026-11-12-0.1.0

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ConductScience Library. IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences. Papers, record 30989184. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/30989184

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Paper

PubMed's record of the paper, with iCite's citation figures. No abstract is shown.

Title: IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences.; PubMed
Journal: Bioinformatics; PubMed
Year: 2019; PubMed
Publication types: Journal Article, Research Support, Non-U.S. Gov't; PubMed
PubMed: https://pubmed.ncbi.nlm.nih.gov/30989184/; PubMed
DOI: https://doi.org/10.1093/bioinformatics/btz247; PubMed
The journal: https://conductscience.org/library/journal-index/9808944; PubMed
Citations, by iCite: 267; iCite
Relative citation ratio, by iCite: 9.44; iCite
Revised in PubMed: 2020-07-01; PubMed

Authors2

The authors in the order PubMed's record lists them, with the ORCID iDs it states.

Order	Author	Forename	Kind	ORCID iD
1	Vitting-Seerup K	Kristoffer
2	Sandelin A	Albin

Source PubMed

Topics6

NLM's MeSH indexing of the paper, its major topics first.

MeSH term	Major
Alternative Splicing	Major topic
Software	Major topic
Genome
Protein Isoforms
RNA Splicing
Sequence Analysis, RNA

Source PubMed

Grants0

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None in this release.

Trials0

The trials whose ClinicalTrials.gov record lists the paper, and the trial numbers the paper's PubMed record names.

None in this release.

Comments and corrections0

PubMed's comments and corrections, NLM's own indexing: retractions first, then expressions of concern, errata and updates, and comments last.

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References0

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Cited by227

The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 267 citations.

PMID	Title	Journal	Year	In Papers	Source
42,926,444	IsoGraph resolves coordinated transcript choice and gene abundance in the aging human brain.	bioRxiv	2026	https://conductscience.org/library/papers/42926444	PubMed
42,876,144	A Hypertrophic Stimulus Drives Age-Dependent Transcript Isoform Switching With and Without Differential Gene Expression in Skeletal Muscle.	Aging Cell	2026	https://conductscience.org/library/papers/42876144	PubMed
42,840,959	Epitranscriptomic profiling of VSMC phenotypes reveals uridine modifications linked to post-transcriptional regulation.	Biochem Biophys Rep	2026	https://conductscience.org/library/papers/42840959	PubMed
42,830,932	Deciphering transcriptome complexity via long-read sequencing.	Imeta	2026	https://conductscience.org/library/papers/42830932	PubMed
42,799,506	Nanopore direct RNA sequencing and the epitranscriptome: Advances in mapping native RNA landscapes.	Imeta	2026	https://conductscience.org/library/papers/42799506	PubMed
42,760,511	Long-read RNA-seq maps the isoform landscape of the trigeminal ganglion in an allergic rhinitis mouse model.	BMC Genomics	2026	https://conductscience.org/library/papers/42760511	PubMed
42,700,218	Single-cell multi-omics dissects transcript isoform and immune repertoire dynamics in human immunosenescence.	Sci China Life Sci	2026	https://conductscience.org/library/papers/42700218	PubMed
42,680,762	Long-read proteogenomic atlas of human neuronal differentiation reveals isoform diversity informing neurodevelopmental risk mechanisms.	Nat Commun	2026	https://conductscience.org/library/papers/42680762	PubMed
42,646,362	Long-Read RNA Sequencing Reveals an Isoform Switching Pattern in Healthy Microglial Cell Lines Exposed to Radiotherapy.	Noncoding RNA	2026	https://conductscience.org/library/papers/42646362	PubMed
42,645,529	Subcellular localization of human long non-coding RNAs is an isoform-resolved property masked by gene-level analysis.	Mol Genet Genomics	2026	https://conductscience.org/library/papers/42645529	PubMed

1 to 10 of 227

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Genes0

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None in this release.

Drugs0

The drugs whose trials, in the Pipelines release, list the paper.

None in this release.

Data0

The data bank entries PubMed's record names. Trial numbers are under Trials.

None in this release.

Data dates

The date of each source this release read.

PubMed: 2026-11-06; PubMed
iCite: 2026-11-05; iCite
PMC's ID file: 2026-11-05; PMC's ID file
NIH RePORTER's grant and paper links: 2026-11-01; NIH RePORTER's grant and paper links
Trials: 2026-11-12
Gene search: 2026-11-11
Pipelines: 2026-09-18

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ChEMBL, through Open TargetsCC BY-SA 3.0
ClinicalTrials.govNo license stated
HGNCCC0
iCiteCC BY 4.0
NCBI GenePublic domain (US government)
NIH RePORTER's grant and paper linksPublic domain
Open TargetsCC0 1.0
PMC's ID filePublic domain (US government)
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0

Each source's terms

ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
ClinicalTrials.govnone stated
HGNCCC0: https://www.genenames.org/about/license/
iCiteCC BY 4.0
NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license

ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.

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