Paper · 41290682
Genome assembly and structural variations of Guyuan cattle.
Liu S and 9 others. Sci Data, 2025. Cited by 3 papers, by iCite.
11 sourcespapers-2026-11-12-0.1.0
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ConductScience Library. Genome assembly and structural variations of Guyuan cattle. Papers, record 41290682. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/41290682
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Paper
PubMed's record of the paper, with iCite's citation figures. No abstract is shown.
Topics5
NLM's MeSH indexing of the paper, its major topics first.
| MeSH term | Major |
|---|---|
| Genome | Major topic |
| Genomic Structural Variation | Major topic |
| Animals | |
| Cattle | |
| China |
Source PubMed
Grants13
Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.
| Grant, as the record writes it | Agency | Country | NIH project | Stated by |
|---|---|---|---|---|
| U22A20506 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed | ||
| 32472871 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed | ||
| U22A20506 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed | ||
| 32472871 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed | ||
| 32472871 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed | ||
| U22A20506 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed | ||
| 32472871 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed | ||
| U22A20506 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed | ||
| 32472871 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed | ||
| U22A20506 | National Natural Science Foundation of China (National Science Foundation of China) | PubMed |
1 to 10 of 13Source PubMed
See all 13 grantsTrials0
The trials whose ClinicalTrials.gov record lists the paper, and the trial numbers the paper's PubMed record names.
None in this release.
Comments and corrections0
PubMed's comments and corrections, NLM's own indexing: retractions first, then expressions of concern, errata and updates, and comments last.
None in this release.
References30
The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.
| Order | PMID | Title | Journal | Year | In Papers | Source |
|---|---|---|---|---|---|---|
| 1 | 41,290,682 | Genome assembly and structural variations of Guyuan cattle. | Sci Data | 2025 | https://conductscience.org/library/papers/41290682 | PubMed |
| 2 | 38,168,980 | Detection of mosaic and population-level structural variants with Sniffles2. | Nat Biotechnol | 2024 | https://conductscience.org/library/papers/38168980 | PubMed |
| 3 | 34,623,391 | New strategies to improve minimap2 alignment accuracy. | Bioinformatics | 2021 | https://conductscience.org/library/papers/34623391 | PubMed |
| 4 | 32,928,274 | Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies. | Genome Biol | 2020 | https://conductscience.org/library/papers/32928274 | PubMed |
| 5 | 30,668,829 | SVIM: structural variant identification using mapped long reads. | Bioinformatics | 2019 | https://conductscience.org/library/papers/30668829 | PubMed |
| 6 | 31,020,564 | BUSCO: Assessing Genome Assembly and Annotation Completeness. | Methods Mol Biol | 2019 | https://conductscience.org/library/papers/31020564 | PubMed |
| 7 | 32,188,846 | GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes. | Nat Commun | 2020 | https://conductscience.org/library/papers/32188846 | PubMed |
| 8 | 36,575,487 | Truvari: refined structural variant comparison preserves allelic diversity. | Genome Biol | 2022 | https://conductscience.org/library/papers/36575487 | PubMed |
| 9 | 23,422,339 | QUAST: quality assessment tool for genome assemblies. | Bioinformatics | 2013 | https://conductscience.org/library/papers/23422339 | PubMed |
| 10 | 25,402,007 | Fast and sensitive protein alignment using DIAMOND. | Nat Methods | 2015 | https://conductscience.org/library/papers/25402007 | PubMed |
1 to 10 of 30
See all 30 referencesCited by3
The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 3 citations.
| PMID | Title | Journal | Year | In Papers | Source |
|---|---|---|---|---|---|
| 42,777,077 | Structural Variant benchmarking frameworks: Parameterization, matching logic, and evaluation assumptions presented through HG002 and NA12878. | PLoS Comput Biol | 2026 | https://conductscience.org/library/papers/42777077 | PubMed |
| 42,291,107 | Integrated analysis of phenotypes and whole-transcriptome data for the preliminary exploration of molecular regulatory networks influencing beef quality. | Food Chem (Oxf) | 2026 | https://conductscience.org/library/papers/42291107 | PubMed |
| 41,290,682 | Genome assembly and structural variations of Guyuan cattle. | Sci Data | 2025 | https://conductscience.org/library/papers/41290682 | PubMed |
Genes0
The genes the Gene search release ties to the paper: Swiss-Prot's references first, then PubTator's text mining.
None in this release.
Drugs0
The drugs whose trials, in the Pipelines release, list the paper.
None in this release.
Data0
The data bank entries PubMed's record names. Trial numbers are under Trials.
None in this release.
Data dates
The date of each source this release read.
- Trials
- 2026-11-12
- Gene search
- 2026-11-11
- Pipelines
- 2026-09-18
Sources 11
- ChEMBL, through Open TargetsCC BY-SA 3.0
- ClinicalTrials.govNo license stated
- HGNCCC0
- iCiteCC BY 4.0
- NCBI GenePublic domain (US government)
- NIH RePORTER's grant and paper linksPublic domain
- Open TargetsCC0 1.0
- PMC's ID filePublic domain (US government)
- PubMedNLM's terms
- PubTator 3Public domain
- UniProtCC BY 4.0
Each source's terms
- ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
- ClinicalTrials.govnone stated
- HGNCCC0: https://www.genenames.org/about/license/
- iCiteCC BY 4.0
- NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
- NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
- Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
- PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
- PubMedNLM's terms
- PubTator 3Public domain
- UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license
ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.
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