Paper · 42864337

RAISE quantifies RNA binding protein activity via transcriptomic profiling.

Liu Y and 6 others. Nat Commun, 2026.

11 sourcespapers-2026-11-12-0.1.0

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ConductScience Library. RAISE quantifies RNA binding protein activity via transcriptomic profiling. Papers, record 42864337. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/42864337

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Paper

PubMed's record of the paper, with iCite's citation figures. No abstract is shown.

Title: RAISE quantifies RNA binding protein activity via transcriptomic profiling.
Journal: Nat Commun
Year: 2026
Publication types: Journal Article, Research Support, Non-U.S. Gov't
PubMed: https://pubmed.ncbi.nlm.nih.gov/42864337/
DOI: https://doi.org/10.1038/s41467-026-77620-y
PMC: https://pmc.ncbi.nlm.nih.gov/articles/PMC13658764/
The journal: https://conductscience.org/library/journal-index/101528555
Revised in PubMed: 2026-10-22

Source PubMed

Authors7

The authors in the order PubMed's record lists them, with the ORCID iDs it states.

Order	Author	Forename	ORCID iD
1	Liu Y	Yilei	https://orcid.org/0009-0002-7085-2471
2	Lo Y	Yingtung
3	Zheng Y	Youqi	https://orcid.org/0009-0001-1947-9344
4	Xiong P	Pinxin	https://orcid.org/0009-0003-2227-8986
5	Lu J	Jianzhong
6	Feng Z	Zhixing	https://orcid.org/0000-0003-0308-8549
7	Feng H	Huijuan	https://orcid.org/0000-0002-4005-560X

Source PubMed

Topics9

NLM's MeSH indexing of the paper, its major topics first.

MeSH term	Major
RNA-Binding Proteins	Major topic
Gene Expression Profiling	Major topic
Transcriptome	Major topic
Humans
Alternative Splicing
Exons
Neoplasms
Computational Biology
Gene Regulatory Networks

Source PubMed

Grants2

Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.

Grant, as the record writes it	Agency	Country	NIH project	Stated by
32470684	National Natural Science Foundation of China (National Science Foundation of China)			PubMed
32370695	National Natural Science Foundation of China (National Science Foundation of China)			PubMed

Source PubMed

Trials0

The trials whose ClinicalTrials.gov record lists the paper, and the trial numbers the paper's PubMed record names.

None in this release.

Comments and corrections0

PubMed's comments and corrections, NLM's own indexing: retractions first, then expressions of concern, errata and updates, and comments last.

None in this release.

References78

The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.

Order	PMID	Title	Journal	Year	In Papers	Source
1	39,146,933	Molecular impact of mutations in RNA splicing factors in cancer.	Mol Cell	2024	https://conductscience.org/library/papers/39146933	PubMed
2	25,605,792	limma powers differential expression analyses for RNA-sequencing and microarray studies.	Nucleic Acids Res	2015	https://conductscience.org/library/papers/25605792	PubMed
3	22,411,467	Insights into the regulation of protein abundance from proteomic and transcriptomic analyses.	Nat Rev Genet	2012	https://conductscience.org/library/papers/22411467	PubMed
4	35,848,884	HNRNPC downregulation inhibits IL-6/STAT3-mediated HCC metastasis by decreasing HIF1A expression.	Cancer Sci	2022	https://conductscience.org/library/papers/35848884	PubMed
5	27,793,091	CoSpliceNet: a framework for co-splicing network inference from transcriptomics data.	BMC Genomics	2016	https://conductscience.org/library/papers/27793091	PubMed
6	38,247,183	The logic of protein post-translational modifications (PTMs): Chemistry, mechanisms and evolution of protein regulation through covalent attachments.	Bioessays	2024	https://conductscience.org/library/papers/38247183	PubMed
7	40,323,145	MRAS: Master Regulator Analysis of Alternative Splicing.	Adv Sci (Weinh)	2025	https://conductscience.org/library/papers/40323145	PubMed
8	29,990,503	PTBP1-Mediated Alternative Splicing Regulates the Inflammatory Secretome and the Pro-tumorigenic Effects of Senescent Cells.	Cancer Cell	2018	https://conductscience.org/library/papers/29990503	PubMed
9	33,235,359	RNA-binding proteins in human genetic disease.	Nat Rev Genet	2021	https://conductscience.org/library/papers/33235359	PubMed
10	31,026,342	QKI, a miR-200 target gene, suppresses epithelial-to-mesenchymal transition and tumor growth.	Int J Cancer	2019	https://conductscience.org/library/papers/31026342	PubMed

1 to 10 of 78

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Cited by1

The papers in our copy of PubMed whose reference list names this one, newest first.

PMID	Title	Journal	Year	In Papers
42,864,337	RAISE quantifies RNA binding protein activity via transcriptomic profiling.	Nat Commun	2026	https://conductscience.org/library/papers/42864337

Source PubMed

Genes0

The genes the Gene search release ties to the paper: Swiss-Prot's references first, then PubTator's text mining.

None in this release.

Drugs0

The drugs whose trials, in the Pipelines release, list the paper.

None in this release.

Data0

The data bank entries PubMed's record names. Trial numbers are under Trials.

None in this release.

Data dates

The date of each source this release read.

PubMed: 2026-11-06; PubMed
iCite: 2026-11-05; iCite
PMC's ID file: 2026-11-05; PMC's ID file
NIH RePORTER's grant and paper links: 2026-11-01; NIH RePORTER's grant and paper links
Trials: 2026-11-12
Gene search: 2026-11-11
Pipelines: 2026-09-18

Sources 11

ChEMBL, through Open TargetsCC BY-SA 3.0
ClinicalTrials.govNo license stated
HGNCCC0
iCiteCC BY 4.0
NCBI GenePublic domain (US government)
NIH RePORTER's grant and paper linksPublic domain
Open TargetsCC0 1.0
PMC's ID filePublic domain (US government)
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0

Each source's terms

ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
ClinicalTrials.govnone stated
HGNCCC0: https://www.genenames.org/about/license/
iCiteCC BY 4.0
NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
PubMedNLM's terms
PubTator 3Public domain
UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license

ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.

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