Paper24920161
Phosphoproteomic approach to characterize protein mono- and poly(ADP-ribosyl)ation sites from cells.
Daniels CM and 2 others. J Proteome Res, 2014. Cited by 111 papers, by iCite.
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ConductScience Library. Phosphoproteomic approach to characterize protein mono- and poly(ADP-ribosyl)ation sites from cells. Papers, record 24920161. Release papers-2026-11-12-0.1.0, 12 Nov 2026. https://conductscience.org/library/papers/24920161
Paper
PubMed's record of the paper, with iCite's citation figures. No abstract is shown.
Topics14
NLM's MeSH indexing of the paper, its major topics first.
| MeSH term | Major |
|---|---|
| Amino Acids | Major topic |
| Crotalid Venoms | Major topic |
| Phosphodiesterase I | Major topic |
| Poly Adenosine Diphosphate Ribose | Major topic |
| Proteomics | Major topic |
| Adenosine Diphosphate Ribose | |
| Binding Sites | |
| Chromatography, Liquid | |
| DNA Primers | |
| HeLa Cells | |
| Humans | |
| Molecular Structure | |
| Poly(ADP-ribose) Polymerases | |
| Tandem Mass Spectrometry |
Source PubMed
Grants4
Each grant PubMed's record writes, matched to the NIH project NIH's grant and paper links name for this paper, and each of those links the record does not write.
| Grant, as the record writes it | Agency | Country | NIH project | Stated by | Source |
|---|---|---|---|---|---|
| P30 DA028846 | NIDA NIH HHS | United States | P30DA028846 | PubMed and NIH | NIH RePORTER |
| T32 CA009110 | NCI NIH HHS | United States | T32CA009110 | PubMed and NIH | NIH RePORTER |
| P30DA028846-01 | NIDA NIH HHS | United States | P30DA028846 | PubMed and NIH | NIH RePORTER |
| 5T32CA009110-35 | NCI NIH HHS | United States | T32CA009110 | PubMed and NIH | NIH RePORTER |
References49
The papers the reference list in PubMed's record names, those in our copy of PubMed, in the list's order.
| Order | PMID | Title | Journal | Year | In Papers | Source |
|---|---|---|---|---|---|---|
| 1 | 3,139,015 | Modulation of chromatin structure by poly(ADP-ribosyl)ation. | Biochem Cell Biol | 1988 | https://conductscience.org/library/papers/3139015 | PubMed |
| 2 | 23,474,712 | A family of macrodomain proteins reverses cellular mono-ADP-ribosylation. | Nat Struct Mol Biol | 2013 | https://conductscience.org/library/papers/23474712 | PubMed |
| 3 | 18,833,199 | The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry. | Nat Protoc | 2008 | https://conductscience.org/library/papers/18833199 | PubMed |
| 4 | 21,680,843 | SIRT6 promotes DNA repair under stress by activating PARP1. | Science | 2011 | https://conductscience.org/library/papers/21680843 | PubMed |
| 5 | 24,055,347 | Proteome-wide identification of poly(ADP-Ribosyl)ation targets in different genotoxic stress responses. | Mol Cell | 2013 | https://conductscience.org/library/papers/24055347 | PubMed |
| 6 | 22,847,107 | Reanalysis of phosphoproteomics data uncovers ADP-ribosylation sites. | Nat Methods | 2012 | https://conductscience.org/library/papers/22847107 | PubMed |
| 7 | 21,183,079 | A tissue-specific atlas of mouse protein phosphorylation and expression. | Cell | 2010 | https://conductscience.org/library/papers/21183079 | PubMed |
| 8 | 1,648,406 | Enzymological properties of poly(ADP-ribose)polymerase: characterization of automodification sites and NADase activity. | Biochim Biophys Acta | 1991 | https://conductscience.org/library/papers/1648406 | PubMed |
| 9 | 20,946,866 | Discontinuous pH gradient-mediated separation of TiO2-enriched phosphopeptides. | Anal Biochem | 2011 | https://conductscience.org/library/papers/20946866 | PubMed |
| 10 | 4,319,398 | Studies on poly (adenosine diphosphate ribose). V. Mechanism of hydrolysis of poly (adenosine diphosphate ribose) by snake venom phosphodiesterase. | J Biol Chem | 1970 | https://conductscience.org/library/papers/4319398 | PubMed |
| 11 | 20,525,793 | PARP1 ADP-ribosylates lysine residues of the core histone tails. | Nucleic Acids Res | 2010 | https://conductscience.org/library/papers/20525793 | PubMed |
| 12 | 16,829,982 | Poly(ADP-ribose): novel functions for an old molecule. | Nat Rev Mol Cell Biol | 2006 | https://conductscience.org/library/papers/16829982 | PubMed |
| 13 | 15,300,772 | Characterization of dynamic and steady-state protein phosphorylation using a fluorescent phosphoprotein gel stain and mass spectrometry. | Electrophoresis | 2004 | https://conductscience.org/library/papers/15300772 | PubMed |
| 14 | 23,474,714 | Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases. | Nat Struct Mol Biol | 2013 | https://conductscience.org/library/papers/23474714 | PubMed |
| 15 | 23,639,026 | Expanding functions of intracellular resident mono-ADP-ribosylation in cell physiology. | FEBS J | 2013 | https://conductscience.org/library/papers/23639026 | PubMed |
| 16 | 19,764,761 | Identification of the ADP-ribosylation sites in the PARP-1 automodification domain: analysis and implications. | J Am Chem Soc | 2009 | https://conductscience.org/library/papers/19764761 | PubMed |
| 17 | 23,438,649 | Mapping PARP-1 auto-ADP-ribosylation sites by liquid chromatography-tandem mass spectrometry. | J Proteome Res | 2013 | https://conductscience.org/library/papers/23438649 | PubMed |
| 18 | 15,902,274 | The macro domain is an ADP-ribose binding module. | EMBO J | 2005 | https://conductscience.org/library/papers/15902274 | PubMed |
| 19 | 19,372,272 | Molecular mechanism of poly(ADP-ribosyl)ation by PARP1 and identification of lysine residues as ADP-ribose acceptor sites. | Nucleic Acids Res | 2009 | https://conductscience.org/library/papers/19372272 | PubMed |
| 20 | 15,591,342 | Failure to degrade poly(ADP-ribose) causes increased sensitivity to cytotoxicity and early embryonic lethality. | Proc Natl Acad Sci U S A | 2004 | https://conductscience.org/library/papers/15591342 | PubMed |
Cited by86
The papers in our copy of PubMed whose reference list names this one, newest first. iCite, which reads more sources, counts 111 citations.
| PMID | Title | Journal | Year | In Papers | Source |
|---|---|---|---|---|---|
| 42,880,282 | Functional diversification of the cephalopod proteome by RNA editing. | Cell | 2026 | https://conductscience.org/library/papers/42880282 | PubMed |
| 42,357,598 | Interactomics of SARS-CoV-2 Macrodomain 1 Reveals Putative Clients of ADP-Ribosyl Hydrolase Activity. | Viruses | 2026 | https://conductscience.org/library/papers/42357598 | PubMed |
| 42,203,779 | Deciphering cytokine-driven ADP-ribosylation signaling networks via Af1521-based mass spectrometry analysis of labile Glu/Asp-linkages. | Nat Commun | 2026 | https://conductscience.org/library/papers/42203779 | PubMed |
| 41,279,050 | Interactomics of SARS-CoV-2 Macrodomain 1 Reveals Putative Clients of ADP-ribosyl Hydrolase Activity. | bioRxiv | 2025 | https://conductscience.org/library/papers/41279050 | PubMed |
| 41,206,044 | Histone PARylation factor 1: a review of its role in the DNA damage response. | Nucleic Acids Res | 2025 | https://conductscience.org/library/papers/41206044 | PubMed |
| 40,923,756 | Poly (ADP-ribose) polymerase in yeasts: characterization and involvement in telomere maintenance. | Nucleic Acids Res | 2025 | https://conductscience.org/library/papers/40923756 | PubMed |
| 40,403,420 | Overexpression of the WWE domain of RNF146 modulates poly-(ADP)-ribose dynamics at sites of DNA damage. | DNA Repair (Amst) | 2025 | https://conductscience.org/library/papers/40403420 | PubMed |
| 40,079,415 | dELTA-MS: A Mass Spectrometry-Based Proteomics Approach for Identifying ADP-Ribosylation Sites and Forms. | J Proteome Res | 2025 | https://conductscience.org/library/papers/40079415 | PubMed |
| 39,572,750 | Cryptic phosphoribosylase activity of NAMPT restricts the virion incorporation of viral proteins. | Nat Metab | 2024 | https://conductscience.org/library/papers/39572750 | PubMed |
| 39,221,603 | Poly-ADP-ribosylation dynamics, signaling, and analysis. | Environ Mol Mutagen | 2024 | https://conductscience.org/library/papers/39221603 | PubMed |
| 39,214,972 | Phosphoribosyl modification of poly-ubiquitin chains at the Legionella-containing vacuole prohibiting autophagy adaptor recognition. | Nat Commun | 2024 | https://conductscience.org/library/papers/39214972 | PubMed |
| 38,762,517 | Preserving ester-linked modifications reveals glutamate and aspartate mono-ADP-ribosylation by PARP1 and its reversal by PARG. | Nat Commun | 2024 | https://conductscience.org/library/papers/38762517 | PubMed |
| 37,268,618 | Serine ADP-ribosylation in Drosophila provides insights into the evolution of reversible ADP-ribosylation signalling. | Nat Commun | 2023 | https://conductscience.org/library/papers/37268618 | PubMed |
| 37,119,811 | PARPs and ADP-ribosylation: Deciphering the complexity with molecular tools. | Mol Cell | 2023 | https://conductscience.org/library/papers/37119811 | PubMed |
| 36,165,040 | Uncommon posttranslational modifications in proteomics: ADP-ribosylation, tyrosine nitration, and tyrosine sulfation. | Mass Spectrom Rev | 2024 | https://conductscience.org/library/papers/36165040 | PubMed |
| 35,800,891 | The C-Terminal Domain of Y-Box Binding Protein 1 Exhibits Structure-Specific Binding to Poly(ADP-Ribose), Which Regulates PARP1 Activity. | Front Cell Dev Biol | 2022 | https://conductscience.org/library/papers/35800891 | PubMed |
| 35,652,091 | Research Progress on Mono-ADP-Ribosyltransferases in Human Cell Biology. | Front Cell Dev Biol | 2022 | https://conductscience.org/library/papers/35652091 | PubMed |
| 35,380,161 | Are PARPs promiscuous? | Biosci Rep | 2022 | https://conductscience.org/library/papers/35380161 | PubMed |
| 35,056,042 | The Conserved Macrodomain Is a Potential Therapeutic Target for Coronaviruses and Alphaviruses. | Pathogens | 2022 | https://conductscience.org/library/papers/35056042 | PubMed |
| 34,869,334 | The Making and Breaking of Serine-ADP-Ribosylation in the DNA Damage Response. | Front Cell Dev Biol | 2021 | https://conductscience.org/library/papers/34869334 | PubMed |
Genes9
The genes the Gene search release ties to the paper: Swiss-Prot's references first, then PubTator's text mining.
| Gene | NCBI Gene ID | Linked by | In Genes | Source |
|---|---|---|---|---|
| BRCA1 | 672 | PubTator's text mining | https://conductscience.org/library/genes/672 | NCBI Gene |
| FGF4 | 2,249 | PubTator's text mining | https://conductscience.org/library/genes/2249 | NCBI Gene |
| HNRNPA1 | 3,178 | PubTator's text mining | https://conductscience.org/library/genes/3178 | NCBI Gene |
| HNRNPU | 3,192 | PubTator's text mining | https://conductscience.org/library/genes/3192 | NCBI Gene |
| PARG | 8,505 | PubTator's text mining | https://conductscience.org/library/genes/8505 | NCBI Gene |
| PARP1 | 142 | PubTator's text mining | https://conductscience.org/library/genes/142 | NCBI Gene |
| SRSF2 | 6,427 | PubTator's text mining | https://conductscience.org/library/genes/6427 | NCBI Gene |
| WDTC1 | 23,038 | PubTator's text mining | https://conductscience.org/library/genes/23038 | NCBI Gene |
| ZNF274 | 10,782 | PubTator's text mining | https://conductscience.org/library/genes/10782 | NCBI Gene |
Data dates
The date of each source this release read.
- Trials
- 2026-11-12
- Gene search
- 2026-11-11
- Pipelines
- 2026-09-18
None in this release
- Trials
- Comments and corrections
- Drugs
- Data
Sources 11
- ChEMBL, through Open TargetsCC BY-SA 3.0
- ClinicalTrials.govNo license stated
- HGNCCC0
- iCiteCC BY 4.0
- NCBI GenePublic domain (US government)
- NIH RePORTER's grant and paper linksPublic domain
- Open TargetsCC0 1.0
- PMC's ID filePublic domain (US government)
- PubMedNLM's terms
- PubTator 3Public domain
- UniProtCC BY 4.0
Each source's terms
- ChEMBL, through Open TargetsCC BY-SA 3.0, for the parts from ChEMBL. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
- ClinicalTrials.govnone stated
- HGNCCC0: https://www.genenames.org/about/license/
- iCiteCC BY 4.0
- NCBI GeneNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
- NIH RePORTER's grant and paper linksPublic domain (NIH RePORTER)
- Open TargetsCC0 1.0. Open Targets asks that users cite its latest paper: Buniello et al. 2025, Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery, Nucleic Acids Research 53(D1):D1467, PMID 39657122. Read on 8 Nov 2026 at https://platform-docs.opentargets.org/licence
- PMC's ID fileNone named for the file. NCBI says information created by or for the US government on its site is in the public domain, and asks that NLM be acknowledged: https://www.ncbi.nlm.nih.gov/home/about/policies/
- PubMedNLM's terms
- PubTator 3Public domain
- UniProtCC BY 4.0. UniProt's licence file: "All databases and documents in the UniProt FTP directory may be copied and redistributed freely, without advance permission, provided that this copyright statement is reproduced with each copy." UniProt asks that users cite its latest paper: The UniProt Consortium, UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research 53:D609-D617, https://doi.org/10.1093/nar/gkae1010. Read on 9 Nov 2026 at https://www.uniprot.org/help/license
ClinicalTrials.gov's data carry an international copyright outside the United States: https://clinicaltrials.gov/about-site/terms-conditions.
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